Implementations of computational state transitions with biomolecules

Multi-state Modeling of Biomolecules

Multi-state modeling of biomolecules refers to a series of techniques used to represent and compute the behavior of biological molecules or complexes that can adopt a large number of possible functional states. Biological signaling systems often rely on complexes of biological macromolecules that can undergo several functionally significant modifications that are mutually compatible. Thus, they...

Computational intelligence - concepts to implementations

PREFACE Several computational analytic tools have matured in the last 10 to 15 years that facilitate solving problems that were previously difficult or impossible to solve. These new analytical tools, known collectively as computational intelligence tools, include artificial neural networks, fuzzy systems, and evolutionary computation. They have recently been combined among themselves as well a...

Arabic Computational Linguistics: Current Implementations

State Transitions

The baby had yet to arrive, but the rest of Michael’s new life was starting to become real. A year after nishing his doctorate, Michael was starting a teaching job at a university in a new city. The transition had been extended by an opportunity to work at an Internet company for six months. As a result, Michael didn’t fully appreciate his new identity. He described his roles, assignments, and ...

Computational topology with Regina: Algorithms, heuristics and implementations

Regina is a software package for studying 3-manifold triangulations and normal surfaces. It includes a graphical user interface and Python bindings, and also supports angle structures, census enumeration, combinatorial recognition of triangulations, and high-level functions such as 3-sphere recognition, unknot recognition and connected sum decomposition. This paper brings 3-manifold topologists...